Please use this identifier to cite or link to this item: https://hdl.handle.net/11147/13211
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dc.contributor.authorVorob’ev, Mikhail M.en_US
dc.contributor.authorAçıkgöz, Burçin Dersuen_US
dc.contributor.authorGüler, Günnuren_US
dc.contributor.authorGolovanov, Andrey V.en_US
dc.contributor.authorSinitsyna, Olga V.en_US
dc.date.accessioned2023-03-08T10:49:52Z-
dc.date.available2023-03-08T10:49:52Z-
dc.date.issued2023-02-
dc.identifier.urihttps://doi.org/10.3390/ijms24043874-
dc.identifier.urihttps://hdl.handle.net/11147/13211-
dc.descriptionThis work was supported by both RFBR (№ 20-53-46006 to M.M. Vorobev) and TÜBİTAK-2532 (№ 119N423 to G. Güler). The work of the Russian team was supported by the Ministry of Science and Higher Education of the Russian Federation (Contract No. 075-03-2023-642).en_US
dc.description.abstractTryptic proteolysis of protein micelles was studied using β-casein (β-CN) as an example. Hydrolysis of specific peptide bonds in β-CN leads to the degradation and rearrangement of the original micelles and the formation of new nanoparticles from their fragments. Samples of these nanoparticles dried on a mica surface were characterized by atomic force microscopy (AFM) when the proteolytic reaction had been stopped by tryptic inhibitor or by heating. The changes in the content of β-sheets, α-helices, and hydrolysis products during proteolysis were estimated by using Fourier-transform infrared (FTIR) spectroscopy. In the current study, a simple kinetic model with three successive stages is proposed to predict the rearrangement of nanoparticles and the formation of proteolysis products, as well as changes in the secondary structure during proteolysis at various enzyme concentrations. The model determines for which steps the rate constants are proportional to the enzyme concentration, and in which intermediate nano-components the protein secondary structure is retained and in which it is reduced. The model predictions were in agreement with the FTIR results for tryptic hydrolysis of β-CN at different concentrations of the enzyme.en_US
dc.language.isoenen_US
dc.publisherMDPIen_US
dc.relation.ispartofInternational Journal of Molecular Sciencesen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectAtomic force microscopyen_US
dc.subjectBeta-caseinen_US
dc.subjectFourier-transform infrared spectroscopyen_US
dc.subjectProteolysis kineticsen_US
dc.titleProteolysis of micellar β-casein by trypsin: secondary structure characterization and kinetic modeling at different enzyme concentrationsen_US
dc.typeArticleen_US
dc.authorid0000-0002-8485-7372en_US
dc.institutionauthorGüler, Günnuren_US
dc.departmentİzmir Institute of Technology. Physicsen_US
dc.identifier.wosWOS:000939019400001en_US
dc.identifier.scopus2-s2.0-85149028561en_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.identifier.doi10.3390/ijms24043874-
dc.identifier.pmid36835285-
dc.contributor.affiliationA. N. Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciencesen_US
dc.contributor.affiliationİzmir Ekonomi Üniversitesien_US
dc.contributor.affiliation01. Izmir Institute of Technologyen_US
dc.contributor.affiliationA. N. Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciencesen_US
dc.contributor.affiliationA. N. Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciencesen_US
dc.relation.issn1661-6596en_US
dc.description.volume24en_US
dc.description.issue4en_US
dc.identifier.scopusqualityQ1-
item.grantfulltextopen-
item.openairetypeArticle-
item.fulltextWith Fulltext-
item.cerifentitytypePublications-
item.openairecristypehttp://purl.org/coar/resource_type/c_18cf-
item.languageiso639-1en-
crisitem.author.dept04.05. Department of Pyhsics-
Appears in Collections:Physics / Fizik
PubMed İndeksli Yayınlar Koleksiyonu / PubMed Indexed Publications Collection
Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
WoS İndeksli Yayınlar Koleksiyonu / WoS Indexed Publications Collection
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