04.03. Department of Molecular Biology and Genetics

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Author:  Okvur, Devrim Pesen

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Issue DateTitleAuthor(s)
12023Automated analysis of phase-contrast optical microscopy time-lapse images: application to wound healing and cell motility assays of breast cancerErdem, Yusuf Sait; Ayanzadeh, Aydın; Mayalı, Berkay; Balıkçı, Muhammed; Belli, Özge Nur; Uçar, Mahmut; Yalçın Özuysal, Özden ; Pesen Okvur, Devrim ; Önal, Sevgi; Morani, Kenan; Iheme, Leonardo Obinna; Töreyin, Behçet Uğur
22017Bir mikroakışkan aygıt üretimi yöntemiPesen Okvur, Devrim 
32017Bir mikroakışkan cihaz kullanılarak ilaç etkilerinin belirlenmesi için bir yöntemPesen Okvur, Devrim 
42024Blank frame and intensity variation distortion detection and restoration pipeline for phase-contrast microscopy time-lapse imagesUçar, Mahmut; Iheme, Leonardo O.; Önal, Sevgi; Pesen Okvur, Devrim ; Yalçın Özuysal, Özden ; Töreyin, Behçet Uğur; Ünay, Devrim
52021Breast cancer cells and macrophages in a paracrine-juxtacrine loopÖnal, Sevgi; Türker Burhan, Merve; Batı Ayaz, Gizem; Yanık, Hamdullah; Pesen Okvur, Devrim 
62023c-Met activation promotes extravasation of hepatocellular carcinoma cells into 3D-cultured hepatocyte cells in lab-on-a-chip deviceBağcı, Gülsün; Çömez, Dehan; Topel, Hande; Yılmaz, Yeliz; Bağırsakçı, Ezgi; Güneş, Aysim; Batı Ayaz, Gizem; Tahmaz, İsmail; Bilgen, Müge; Solmaz, Gülhas; Pesen Okvur, Devrim 
72021Cancer stem cells in tumor modeling: Challenges and future directionsDoğan, Elvan; Kısım, Aslı; Batı Ayaz, Gizem; Kubicek, Gregory J.; Pesen Okvur, Devrim ; Miri, Amir K.
82012Cell adhesion on nanometer scale protein patterns with micrometer scale spacingsVurmaz, Deniz; Oyman, Gizem; Okvur, Devrim Pesen 
92019Cell segmentation of 2D phase-contrast microscopy images with deep learning methodAyanzadeh, Aydın; Yağar, Hüseyin Onur; Yalçın Özuysal, Özden ; Pesen Okvur, Devrim ; Töreyin, Behçet Uğur; Unay, Devrim; Önal, Sevgi
10Oct-2017Cellular distribution of invadopodia is regulated by nanometer scale surface protein patternsBatı Ayaz, Gizem; Can, Ali; Pesen Okvur, Devrim 
112020Deep learning based segmentation pipeline for label-free phase-contrast microscopy imagesAyanzadeh, Aydın; Yalçın Özuysal, Özden ; Okvur, Devrim Pesen ; Önal, Sevgi; Töreyin, Behçet Uğur; Ünay, Devrim
12Nov-2022Detection and restoration pipeline for phase contrast microscopy time series imagesUçar, Mahmut; Iheme, Leonardo O.; Önal, Sevgi; Yalçın Özuysal, Özden ; Pesen Okvur, Devrim ; Töreyin, Behçet U.; Ünay, Devrim
132013Differential changes in cell shape on nanopatterned surfaces for normal and cancer cellsÖzdil, B.; Horzum, U.; Okvur, Devrim Pesen 
1412-Aug-2015Differentiation of normal and cancer cell adhesion on custom designed protein nanopatternsHorzum, Utku; Özdil, Berrin; Pesen Okvur, Devrim 
152014Fabrication of 3D controlled in vitro microenvironmentsÖzdil, Berrin; Önal, Sevgi; Oruç, Tuğçe; Pesen Okvur, Devrim 
162019Faz kontrast optik mikroskopi zaman serisi görüntülerinde hücrelerin otomatik bölütlenmesiBinici, Rıfkı Can; Şahin, Umut; Ayanzadeh, Aydın; Töreyin, Behçet Uğur; Önal, Sevgi; Okvur, Devrim Pesen ; Yalçın Özuysal, Özden ; Ünay, Devrim
17Dec-2023FLI1 and FRA1 transcription factors drive the transcriptional regulatory networks characterizing muscle invasive bladder cancerGüneri Sözeri, Perihan Yağmur; Özden Yılmaz, Gülden; Kısım, Aslı; Çakıroğlu, Ece; Eray, Aleyna; Uzuner, Hamdiye; Karakülah, Gökhan; Pesen Okvur, Devrim ; Şentürk, Şerif; Erkek Özhan, Serap
182021Improved cell segmentation using deep learning in label-free optical microscopy imagesAyanzadeh, Aydın; Yalçın Özuysal, Özden ; Pesen Okvur, Devrim ; Önal, Sevgi; Töreyin, Behçet Uğur; Ünay, Devrim
192014Invadopodia: Proteolytic feet of cancer cellsBatı, Gizem; Pesen Okvur, Devrim 
202017Method for determining cell migration and invasionPesen Okvur, Devrim