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https://hdl.handle.net/11147/13767
Title: | Gas phase fragmentation behavior of proline in macrocyclic b7 ions | Authors: | Taşoğlu, Çağdaş Arslanoğlu, Alper Yalçın, Talat |
Keywords: | Proline Peptide fragmentation Scramblingof sequence Nondirect sequence ions Macrocyclization ESI MS/MS mass spectrometry |
Publisher: | American Chemical Society | Abstract: | Thefragmentation characteristics of b (7) ionsproduced from proline-containing heptapeptides have been studiedin detail. The study has utilized the following C-terminally amidatedmodel peptides: PA(6), APA(5), A(2)PA(4), A(3)PA(3), A(4)PA(2), A(5)PA, A(6)P, PYAGFLV, PAGFLVY, PGFLVYA, PFLVYAG,PLVYAGF, PVYAGFL, YPAGFLV, YAPGFLV, YAGPFLV, YAGFPLV, YAGFLPV, YAGFLVP,PYAFLVG, PVLFYAG, A(2)PXA(3), and A(2)XPA(3) (where X = C, D, F, G, L, V, and Y, respectively). The resultshave shown that b (7) ions undergo head-to-tailcyclization and form a macrocyclic structure. Under the collision-induceddissociation (CID) condition, it generates nondirect sequence ionsregardless of the position of the proline and the neighboring aminoacid residues. This study highlights the unusual and unique fragmentationbehavior of proline-containing heptapeptides. Following the head-to-tailcyclization, the ring opens up and places the proline residue in theN-terminal position while forming a regular oxazolone form of b (2) ions for all peptide series. Then, the fragmentationreaction pathway is followed by the elimination of proline with itsC-terminal neighbor residue as an oxazolone (e.g., PXoxa) for all proline-containing peptide series. | URI: | https://doi.org/10.1021/jasms.3c00049 https://hdl.handle.net/11147/13767 |
ISSN: | 1044-0305 1879-1123 |
Appears in Collections: | Chemistry / Kimya Molecular Biology and Genetics / Moleküler Biyoloji ve Genetik PubMed İndeksli Yayınlar Koleksiyonu / PubMed Indexed Publications Collection Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection WoS İndeksli Yayınlar Koleksiyonu / WoS Indexed Publications Collection |
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Gas-Phase.pdf | 3.12 MB | Adobe PDF | View/Open |
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