| Issue Date | Title | Author(s) |
| 21 | 2015 | Genomic simple sequence repeat markers reveal patterns of genetic relatedness and diversity in sesame | Uncu, Ayşe Özgür; Gültekin, Visam; Allmer, Jens ; Frary, Anne ; Doğanlar, Sami |
| 22 | 2016 | The impact of feature selection on one and two-class classification performance for plant microRNAs | Khalifa, Waleed; Yousef, Malik; Saçar Demirci, Müşerref Duygu; Allmer, Jens |
| 23 | 2017 | Improving the quality of positive datasets for the establishment of machine learning models for pre-microRNA detection | Saçar Demirci, Müşerref Duygu; Allmer, Jens |
| 4 | Sep-2014 | Intersection of MicroRNA and gene regulatory networks and their implication in cancer | Yousef, Malik; Trinh, Hung V.; Allmer, Jens |
| 5 | Apr-2010 | Label-free quantitation, an extension to 2DB | Allmer, Jens |
| 6 | 28-May-2015 | Lithium protects against paraquat neurotoxicity by NRF2 activation and miR-34a inhibition in SH-SY5Y cells | Alural, Begüm; Özerdem, Ayşegül; Allmer, Jens ; Genç, Kürşad; Genç, Şermin |
| 7 | 2016 | A machine learning approach for MicroRNA precursor prediction in retro-transcribing virus genomes | Saçar Demirci, Müşerref Duygu; Toprak, Mustafa; Allmer, Jens |
| 8 | 2014 | Machine learning methods for microRNA gene prediction | Saçar, Müşerref Duygu; Allmer, Jens |
| 9 | Mar-2017 | MicroRNA categorization using sequence motifs and k-mers | Yousef, Malik; Khalifa, Waleed; Acar, İlhan Erkin ; Allmer, Jens |
| 10 | Aug-2017 | Newly developed SSR markers reveal genetic diversity and geographical clustering in spinach (Spinacia oleracea) | Göl, Şurhan; Göktay, Mehmet ; Allmer, Jens ; Doğanlar, Sami ; Frary, Anne |
| 11 | Dec-2017 | On the performance of pre-microRNA detection algorithms | Saçar Demirci, Müşerref Duygu; Baumbach, Jan; Allmer, Jens |
| 12 | Jan-2016 | One step forward, two steps back; Xeno-MicroRNAs reported in breast milk are artifacts | Bağcı, Caner; Allmer, Jens |
| 13 | 2016 | PGMiner reloaded, fully automated proteogenomic annotation tool linking genomes to proteomes | Has, Canan; Lashin, Sergey A.; Kochetov, Alexey; Allmer, Jens |
| 14 | Apr-2017 | PGMiner: Complete proteogenomics workflow; from data acquisition to result visualization | Has, Canan; Allmer, Jens |
| 15 | May-2018 | Transcriptomic analysis of boron hyperaccumulation mechanisms in Puccinellia distans | Öztürk, Saniye Elvan; Göktay, Mehmet ; Has, Canan; Babaoğlu, Mehmet; Allmer, Jens ; Doğanlar, Sami ; Frary, Anne |
| 16 | 2017 | Visualization and analysis of MicroRNAs within KEGG pathways using VANESA | Hamzeiy, Hamid; Suluyayla, Rabia; Brinkrolf, Christoph; Janowski, Sebastian Jan; Hofestaedt, Ralf; Allmer, Jens |
| 17 | 2018 | Visualization and analysis of miRNAs implicated in amyotrophic lateral sclerosis within gene regulatory pathways | Hamzeiy, Hamid; Suluyayla, Rabia; Brinkrolf, Christoph; Janowski, Sebastian Jan; Hofestädt, Ralf; Allmer, Jens |
