| Issue Date | Title | Author(s) |
| 41 | 2016 | A machine learning approach for MicroRNA precursor prediction in retro-transcribing virus genomes | Saçar Demirci, Müşerref Duygu; Toprak, Mustafa; Allmer, Jens |
| 42 | 2014 | Machine learning methods for microRNA gene prediction | Saçar, Müşerref Duygu; Allmer, Jens |
| 43 | Mar-2017 | MicroRNA categorization using sequence motifs and k-mers | Yousef, Malik; Khalifa, Waleed; Acar, İlhan Erkin ; Allmer, Jens |
| 44 | 2017 | Mikro-RNA metabolik ağ kontrol analizi için veri ambarı | Allmer, Jens ; Saçar Demirci, Müşerref Duygu; Acar, İlhan Erkin |
| 45 | 2014 | miRNomics: MicroRNA biology and computational analysis preface | Yousef, Malik; Allmer, Jens |
| 46 | 2012 | Ms Homolog özelliğe dayalı veritabanı aramalarının kapsamının genişletilmesi | Allmer, Jens ; Yılmaz, Şule |
| 47 | Aug-2017 | Newly developed SSR markers reveal genetic diversity and geographical clustering in spinach (Spinacia oleracea) | Göl, Şurhan; Göktay, Mehmet ; Allmer, Jens ; Doğanlar, Sami ; Frary, Anne |
| 48 | 2012 | De novo markup language, a standard to represent de novo sequencing results from MS/MS data | Takan, Savaş ; Allmer, Jens |
| 49 | Dec-2017 | On the performance of pre-microRNA detection algorithms | Saçar Demirci, Müşerref Duygu; Baumbach, Jan; Allmer, Jens |
| 50 | Jan-2016 | One step forward, two steps back; Xeno-MicroRNAs reported in breast milk are artifacts | Bağcı, Caner; Allmer, Jens |
| 51 | 2016 | PGMiner reloaded, fully automated proteogenomic annotation tool linking genomes to proteomes | Has, Canan; Lashin, Sergey A.; Kochetov, Alexey; Allmer, Jens |
| 52 | Apr-2017 | PGMiner: Complete proteogenomics workflow; from data acquisition to result visualization | Has, Canan; Allmer, Jens |
| 53 | 2016 | Preparing sequence databases for application in proteogenomics | Has, Canan; Mungan, Mehmet Direnç; Çiftçi, Cansu; Allmer, Jens |
| 54 | 2017 | Puccinellia distans (Jacq.) Parl.’da boron hiperakümülasyonu ve tolerans mekanizmalarının proteomiks yaklaşım kullanarak anlaşılması | Yalçın, Talat ; Frary, Anne ; Allmer, Jens |
| 15 | 2013 | Ranking tandem mass spectra: And the impact of database size and scoring function on peptide spectrum matches | Has, Canan; Kundakçı, Cemal Ulaş; Altay, Aybuge; Allmer, Jens |
| 16 | 2010 | Relative protein quantitation with post translational modifications in mass spectrometry based proteomics | Allmer, Jens |
| 17 | 2012 | Removing contamination from genomic sequences based on vector reference libraries | Bağcı, Caner; Allmer, Jens |
| 18 | 2010 | Systematic computational analysis of potential rnai regulation in toxoplasma gondii | Çakır, Mehmet Volkan; Allmer, Jens |
| 19 | May-2018 | Transcriptomic analysis of boron hyperaccumulation mechanisms in Puccinellia distans | Öztürk, Saniye Elvan; Göktay, Mehmet ; Has, Canan; Babaoğlu, Mehmet; Allmer, Jens ; Doğanlar, Sami ; Frary, Anne |
| 20 | 2017 | Visualization and analysis of MicroRNAs within KEGG pathways using VANESA | Hamzeiy, Hamid; Suluyayla, Rabia; Brinkrolf, Christoph; Janowski, Sebastian Jan; Hofestaedt, Ralf; Allmer, Jens |
