| Issue Date | Title | Author(s) |
| 1 | Oct-2011 | Algorithms for the de novo sequencing of peptides from tandem mass spectra | Allmer, Jens |
| 2 | 2017 | AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs | Kochetov, Alex V.; Allmer, Jens ; Klimenko, Alexandra I.; Zuraev, Bulat S.; Matushkin, Yury G.; Lashin, Sergey A. |
| 3 | 2021 | Antiviral microRNA expression signatures are altered in subacute sclerosing panencephalitis | Tüfekçi, Kemal Uğur; Allmer, Jens ; Çarman, Kürşat Bora; Bayram, Erhan; Topçu, Yasemin; Hız, Semra; Genç, Şermin; Yiş, Uluç |
| 4 | 2013 | Can MiRBase provide positive data for machine learning for the detection of MiRNA hairpins? | Demirci, Müşerref Duygu Saçar; Hamzeiy, Hamid; Allmer, Jens |
| 5 | Dec-2017 | Categorization of species based on their microRNAs employing sequence motifs, information-theoretic sequence feature extraction, and k-mers | Yousef, Malik; Nigatu, Dawit; Levy, Dalit; Allmer, Jens ; Henkel, Werner |
| 6 | 2014 | Computational and bioinformatics methods for microRNA gene prediction | Allmer, Jens |
| 7 | 2012 | Computational methods for ab initio detection of microRNAs | Allmer, Jens ; Yousef, Malik |
| 8 | 2014 | Computational methods for microRNA target prediction | Hamzeiy, Hamid; Yousef, Malik; Allmer, Jens |
| 9 | Oct-2014 | Computational prediction of MicroRNAs from toxoplasma gondii potentially regulating the hosts' gene expression | Saçar, Müşerref Duygu; Bağcı, Caner; Allmer, Jens |
| 10 | 2017 | Delineating the impact of machine learning elements in pre-microRNA detection | Saçar Demirci, Müşerref Duygu; Allmer, Jens |
| 11 | Dec-2013 | Determining the C-terminal amino acid of a peptide from MS/MS data | Allmer, Jens |
| 12 | Jun-2013 | Development of EST-SSR markers for diversity and breeding studies in opium poppy | Şelale, Hatice ; Çelik, İbrahim; Gültekin, Visam; Allmer, Jens ; Doğanlar, Sami ; Frary, Anne |
| 13 | Feb-2017 | Development of genomic simple sequence repeat markers in faba bean by next-generation sequencing | Abuzayed, Mazen A.; Göktay, Mehmet ; Allmer, Jens ; Doğanlar, Sami ; Frary, Anne |
| 14 | Aug-2014 | Development of genomic simple sequence repeat markers in opium poppy by next-generation sequencing | Çelik, İbrahim; Gültekin, Visam; Allmer, Jens ; Doğanlar, Sami ; Frary, Anne |
| 15 | 2018 | Development of simple sequence repeat markers in hazelnut (Corylus avellana L.) by next-generation sequencing and discrimination of Turkish hazelnut cultivars | Özturk, Süleyman Can; Göktay, Mehmet ; Allmer, Jens ; Doğanlar, Sami ; Frary, Anne |
| 16 | 2020 | DNMSO; an ontology for representing de novo sequencing results from Tandem-MS data | Takan, Savaş ; Allmer, Jens |
| 17 | Sep-2014 | EPO mediates neurotrophic, neuroprotective, anti-oxidant, and anti-apoptotic effects via downregulation of miR-451 and miR-885-5p in SH-SY5Y neuron-like cells | Alural, Begüm; Duran, Gizem Ayna; Tüfekçi, Kemal Uğur; Allmer, Jens ; Onkal, Zeynep; Tunalı, Doğa; Genç, Kürşad; Genç, Şermin |
| 18 | Jan-2012 | Existing bioinformatics tools for the quantitation of post-translational modifications | Allmer, Jens |
| 19 | Jan-2018 | The expressed MicroRNA-mRNA interactions of Toxoplasma gondii | Acar, İlhan Erkin ; Saçar Demirci, Müşerref Duygu; Groß, Uwe; Allmer, Jens |
| 20 | 2016 | Feature selection has a large impact on one-class classification accuracy for micrornas in plants | Yousef, Malik; Demirci, Müşerref Duygu Saçar; Khalifa, Waleed; Allmer, Jens |
