Browsing by Department 04.03. Department of Molecular Biology and Genetics

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Issue DateTitleAuthor(s)
202244 Current Challenges in miRNomicsAkgül, Bünyamin ; Stadler, Peter F.; Hawkins, Liam J.; Hadj-Moussa, Hanane; Storey, Kenneth B.; Ergin, Kemal; Allmer, Jens 
Sep-20135-Fluorouracil signaling through a calcium-calmodulin-dependent pathway is required for p53 activation and apoptosis in colon carcinoma cellsCan, G.; Akpınar, B.; Baran, Yusuf ; Zhivotovsky, B.; Olsson, M.
2018Abnormal GM2 accumulation alters the function of the autophagic pathway in early-onset Tay-Sachs disease mouse modelSeyrantepe, Volkan ; Ateş, Nurselin ; Can, Melike; Şengül, Tuğçe; Akyıldız Demir, Seçil
Feb-2014Absence of superoxide dismutase activity causes nuclear DNA fragmentation during the aging processMuid, Khandaker Ashfaqul; Karakaya, Hüseyin Çaglar; Koç, Ahmet 
2009Accumulation of apoptotic ceramides increased apoptotic effects of nilotinib in Philadelphia positive MEG-01 cells synergisticallyBaran, Yusuf ; Gençer, Emel Başak; Ural, Ali Uğur; Avcu, Ferit
2023Addition of exogenous diacylglycerol enhances Wnt/β-catenin signaling through stimulation of macropinocytosisAzbazdar, Yağmur; Tejeda-Munoz, Nydia; Monka, Julia C.; Dayrit, Alex; Binder, Grace; Özhan, Güneş ; De Robertis, Edward M.
Feb-2004Advanced backcross QTL analysis of a Lycopersicon esculentum x L. pennellii cross and identification of possible orthologs in the SolanaceaeFrary, Anne ; Fulton, Theresa M.; Zamir, Dani; Tanksley, Steven D.
2021Advantage of co-culture strategy for targeted cancer treatment and in vitro studiesUlu, Gizem Tuğçe ; Bayram, Nazende Nur; Dinçer İşoğlu, Sevil; Baran, Yusuf 
2017Afrika yeşil maymunu CV-1 hücre hatlarında, HIV-1 tat proteini varlığında üretilen SLPI proteininin insan hücre hatlarındaki üretiminin incelenmesi ve HIV-1 LTR promotoruna etkisinin araştırılmasıArslanoğlu, Alper ; Koç, Ahmet ; Karakaya, Hüseyin Çağlar 
Nov-2012Aggregatibacter actinomycetemcomitans GroEL Protein Promotes Conversion of Human CD4+ T Cells into IFN gamma IL10 Producing Tbet+ Th1 CellsSaygılı, Tahsin; Akıncılar, Semih Can; Akgül, Bünyamin ; Nalbant Aldanmaz, Ayten 
2016The aggregatibacter actinomycetemcomitans heat shock protein GroEL interacts directly with human peripheral blood T cellsNalbant, Ayten ; Saygılı, Tahsin
2013Agrobacterium rhizogenes-mediated transformation and its biotechnological applications in cropsÖzyiğit, İbrahim İlker; Doğan, İlhan ; Artam Tarhan, Ebru
Oct-2011Algorithms for the de novo sequencing of peptides from tandem mass spectraAllmer, Jens 
2020Alteration in redox homeostasis in early-onset Tay-Sachs disease mouse modelSeyrantepe, Volkan ; Ateş, Nurselin ; Başırlı, Hatice Hande; Demir, Seçil Akyıldız; Dağalp, Berkay; Nalbant, Ayten ; Çalışkan, Tufan Utku
Apr-2017Alteration of protein localization and intracellular calcium content due to connexin26 D50A and A88V mutationsAypek, Hande; Meşe, Gülistan 
Feb-2016Altered cellular localization and hemichannel activities of KID syndrome associated connexin26 I30N and D50Y mutationsAypek, Hande; Bay, Veysel; Meşe, Gülistan 
2015Altered conductance and permeability of Cx40 mutations associated with atrial fibrillationCruz, Ana Santa; Meşe, Gülistan ; Valiuniene, Laima; Brink, Peter R; White, Thomas W.; Valiunas, Virginijus
2014Altered vasoactive peptide composition in the tissues of Cathepsin A deficient miceTimur, Zehra; Akyıldız Demir, Seçil; Çalhan, Y.; Korak, Tuğcan; Ateş, Edanur; Seyrantepe, Volkan 
2017AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAsKochetov, Alex V.; Allmer, Jens ; Klimenko, Alexandra I.; Zuraev, Bulat S.; Matushkin, Yury G.; Lashin, Sergey A.
Aug-2022Analysis of brain lipids in the early-onset Tay–Sachs disease mouse model with the combined deficiency of β-hexosaminidase A and neuraminidase 3Can, Melike; Şengül, Tuğçe; Akyıldız Demir, Seçil; İnci, Orhan K.; Basırlı, Hatice Hande; Seyrantepe, Volkan 
Jun-2016Analysis of EST-SSRs in silver birch (Betula pendula Roth.)Filiz, Ertuğrul; Doğan, İlhan ; Özyigit, İbrahim İlker
2019Analysis of European hazelnut (Corylus avellana) reveals loci for cultivar improvement and the effects of domestication and selection on nut and kernel traitsFrary, Amy; Öztürk, Süleyman Can; Balık, Hüseyin İrfan; Kayalak Balık, Selda; Kızılcı, Gökhan; Doğanlar, Sami ; Frary, Anne 
2014Anormal çalışan yarım kanalların oluşmasına yol açan Cx26 mutasyonları epidermisteki keratinosidlerin kalsiyum iyon dengesini değiştirerek bu hücrelerin farklılaşma mekanizmalarını etkilerMeşe Özçivici, Gülistan 
May-2018An answer to colon cancer treatment by mesenchymal stem cell originated from adipose tissueİplik, Elif Sinem; ERtuğrul, Barış; Kozanoğlu, İlknur; Baran, Yusuf 
Oct-2010Antagonistic roles of Notch and p63 in controlling mammary epithelial cell fatesYalçın Özuysal, Özden ; Fiche, M.; Guitierrez, M.; Wagner, K. U.; Raffoul, W.; Brisken, C.
2018Anti-apoptotik GTF2A1-AS uzun kodlamayan RNA’sının hücreiçi konumunun ve etkileştiği komplekslerin tanımlanmasıAkgül, Bünyamin 
29-Jun-2015Anti-proliferative, apoptotic and signal transduction effects of hesperidin in non-small cell lung cancer cellsÇinçin, Zeynep Birsu; Ünlü, Miray ; Kıran, Bayram; Bireller, Elif Sinem; Baran, Yusuf ; Çakmakoğlu, Bedia
2019Antibiotic-resistant staphylococcus aureus does not develop resistance to vanillic acid and 2-hydroxycinnamic acid after continuous exposure in vitroKeman, Deniz ; Soyer, Ferda 
Nov-2008Antifungal activity of biopolymers containing natamycin and rosemary extract against Aspergillus niger and Penicillium roquefortiiTüre, Hasan; Eroğlu, Erdal; Soyer, Ferda ; Özen, Fatma Banu 
Jul-2010Antimicrobial and antioxidant activities of turkish extra virgin olive oilsKaraosmanoğlu, Hande; Soyer, Ferda ; Özen, Banu ; Tokatlı, Figen 
Jan-2007Antimicrobial and antioxidant activity of edible zein films incorporated with lysozyme, albumin proteins and disodium EDTAMecitoğlu Güçbilmez, Çiğdem; Yemenicioğlu, Ahmet ; Arslanoğlu, Alper 
2008Antimicrobial effect of natural antimicrobial agents against foodborne pathogensEroğlu, Erdal; Türe, Hasan; Soyer, Ferda ; Özen, Banu 
2015Antiproliferative and apoptotic effects of ponatinib and its effects on macromolecular changes in imatinib-sensitive and resistant chronic myeloid leukemia (CML) cell lines: a mechanistic approachKartal Yandım, Melis; Ceylan, Çağatay ; Elmas, Efe; Baran, Yusuf 
2012Antiproliferative and apoptotic effects of resveratrol on chronic lymphocytic leukemia cellsBaran, Yusuf ; Gökbulut, Aysun ; Özcan, Mehmet Ali; Pişkin, Özden; Ünlü, Miray 
2021Antiviral microRNA expression signatures are altered in subacute sclerosing panencephalitisTüfekçi, Kemal Uğur; Allmer, Jens ; Çarman, Kürşat Bora; Bayram, Erhan; Topçu, Yasemin; Hız, Semra; Genç, Şermin; Yiş, Uluç
Feb-2016Apoptotic effects of non-edible parts of Punica granatum on human multiple myeloma cellsKiraz, Yağmur ; Neergheen-Bhujun, Vidushi S.; Rummun, Nawraj; Baran, Yusuf 
Aug-2014Apoptotic effects of quercitrin on DLD-1 colon cancer cell lineÇinçin, Zeynep Birsu; Ünlü, Miray ; Kıran, Bayram; Bireller, Elif Sinem; Baran, Yusuf ; Çakmakoğlu, Bedia
2010Apoptotic effects of resveratrol on imatinib sensitive and resistant K562 chronic myeloid leukemia cellsBaran, Yusuf ; Can, Geylani
Jul-2012Apoptotic effects of resveratrol, a grape polyphenol, on imatinib-sensitive and resistant K562 chronic myeloid leukemia cellsCan, Geylani; Çakır, Zeynep; Kartal, Melis; Gündüz, Ufuk; Baran, Yusuf 
2020Applicability of low-intensity vibrations as a regulatory factor on stem and progenitor cell populationsBaskan, Öznur ; Karadaş, Özge; Meşe, Gülistan ; Özçivici, Engin 
2011Application of EST-SSRS to examine genetic diversity in eggplant and its close relativesTümbilen, Yeliz; Frary, Anne ; Daunay, Marie Christine; Doğanlar, Sami 
2019Application of magnetic levitation induced weightlessness to detect cell lineageSarıgil, Öykü ; Anıl İnevi, Müge ; Yılmaz, Esra; Çağan, Melike; Meşe, Gülistan ; Tekin, Hüseyin Cumhur ; Özçivici, Engin 
2007Arpada (Hordeum vulgera L.) Bor toksisitesine tolerans gösteren genlerin mRNA dıfferentıal dısplay ve rt-pcr yöntemleri ile belirlenmesi ve karakterizasyonuKarakaya, H. Çağlar ; Akıncı, Ersin
2016Assessment of Cd-induced genotoxic damage in Urtica pilulifera L. using RAPD-PCR analysisDoğan, İlhan ; Özyiğit, İbrahim İlker; Tombuloğlu, Güzin; Sakçalı, Mehmet Serdal; Tombuloğlu, Hüseyin
2020Assessment of cell cycle and viability of magnetic levitation assembled cellular structuresAnıl İnevi, Müge ; Ünal, Yağmur Ceren ; Yaman, Sena ; Tekin, H. Cumhur ; Meşe, Gülistan ; Meşe, Gülistan 
Sep-2010Assessment of chronological lifespan dependent molecular damages in yeast lacking mitochondrial antioxidant genesDemir, Ayşe Banu; Koç, Ahmet 
Jul-2019Assessment of liposomal formulations and biological activities of eggplant glycoalkaloidsTatlıdil, Engin 
2023Assessment of undergraduate health students' perception and satisfaction on training and participation in community health outreachAdegbore, Abidemi Kafayat; Adedokun, Amudatu Ambali; Adegoke, Juliet Ifeoluwa; Lawal, Maruf Ayobami; Oke, Muse 
May-2022Association analysis of germination level cold stress tolerance and candidate gene identification in Upland cotton (Gossypium hirsutum L.)Akköse Baytar, Asena ; Peynircioğlu, Ceng; Sezener, Volkan; Frary, Anne ; Doğanlar, Sami 
2019Association mapping of agro-morphological traits in European hazelnut (Corylus avellana)Frary, Amy; Öztürk, Süleyman Can; Balık, Hüseyin İrfan; Balık, Selda Kayalak; Kızılcı, Gökhan; Doğanlar, Sami ; Frary, Anne 
1-Jul-2015Authentication of botanical origin in herbal teas by plastid noncoding DNA length polymorphismsUncu, Ali Tevfik; Uncu, Ayşe Özgür; Frary, Anne ; Doğanlar, Sami 
Jun-2013Autologous rabbit adipose tissue-derived mesenchymal stromal cells for the treatment of bone injuries with distraction osteogenesisSunay, Özgür; Can, Geylani; Çakır, Zeynep; Denek, Ziya; Kozanoglu, İlknur; Erbil, Güven; Yılmaz, Mustafa; Baran, Yusuf 
2023Automated analysis of phase-contrast optical microscopy time-lapse images: application to wound healing and cell motility assays of breast cancerErdem, Yusuf Sait; Ayanzadeh, Aydın; Mayalı, Berkay; Balıkçı, Muhammed; Belli, Özge Nur; Uçar, Mahmut; Yalçın Özuysal, Özden ; Pesen Okvur, Devrim ; Önal, Sevgi; Morani, Kenan; Iheme, Leonardo Obinna; Töreyin, Behçet Uğur
2012Autophagic and apoptotic effects of tyrosine kinase inhibitors in myeloid leukemia: Comparison of three generationKayabaşı, Çağla; Avcı, Çığır Biray; Süslüer, Sunde Yılmaz; Balcı, Tuğçe; Baran, Yusuf ; Saydam, Güray; Gündüz, Cumhur
2023Autophagic flux is impaired in the brain tissue of Tay-Sachs disease mouse modelŞengül, Tuğçe; Can, Melike; Ateş, Nurselin ; Seyrantepe, Volkan 
Oct-2016Bacterial heat shock protein GroEL (Hsp64) exerts immunoregulatory effects on T cells by utilizing apoptosisNalbant, Ayten ; Kant, Melis
Jan-2011Bacterial wilt resistance in tomato, pepper, and eggplant: genetic resources respond to diverse strains in the ralstonia solanacearum species complex.Lebeau, A.; Daunay, M. C.; Frary, Anne ; Palloix, A.; Wang, J. F.; Dintinger, J.; Chiroleu, F.; Wicker, E.; Prior, P.
Apr-2017Barcode DNA length polymorphisms vs fatty acid profiling for adulteration detection in olive oilUncu, Ali Tevfik; Uncu, Ayşe Özgür; Frary, Anne ; Doğanlar, Sami 
2007Bazı kültür ve yabani domates,biber ve patlacan türlerinde antioksidant özelliği olan karakter için mevcut genetik varyasyonun tayin edilmesi ve bu karakterleri kontrol eden genlerin moleküler haritalanmasıFrary, Anne ; Doğanlar, Sami ; Yemenicioğlu, Ahmet ; Rusçuklu, Dane; Ökmen, Bilal ; Şığva, Hasan Özgür; Tümbilen, Yeliz; Keçeli, Mehmet Ali; Yüce, Duygu; Göl, Deniz; Kırsoy, Öyküm
2016Beta maritima bitkisinde tuz toleransında rol oynadığı düşünülen üç genin karakterizasyonuKarakaya, Hüseyin Çağlar 
2007Biber (Capsicum annuum)'da tütün mozayik virüsü (TMV), patates Y virüsü (PVY), ve hıyar mozayik virüslerine (CMV) dayanıklılığı kontrol eden genlerin belirlenmesi, genetik haritalanması ve moleküler ıslahıDoğanlar, Sami ; Frary, Anne ; Gümüş, Mustafa; Balcı, Evrim; Keçeli, Mehmet Ali
2014Biberde kök-uru nematoduna dayanıklılık sağlayan N geninin haritalanması ve moleküler ıslahıFrary, Anne ; Söğüt, Mehmet Ali; Doğanlar, Sami 
Jan-2016Bioactive Sheath/Core nanofibers containing olive leaf extractDoğan, Gamze; Başal, Güldemet; Bayraktar, Oğuz ; Özyıldız, Figen; Uzel, Ataç; Erdoğan, İpek 
Mar-2012Bioactive sphingolipids in docetaxel-induced apoptosis in human prostate cancer cellsBaşsoy, Esen Yonca; Baran, Yusuf 
May-2011Bioactive sphingolipids in response to chemotherapy: A scope on LeukemiasEkiz, Hüseyin Atakan ; Baran, Yusuf 
May-2014Bioactive, functional and edible film-forming properties of isolated hazelnut (Corylus avellana L.) meal proteinsAydemir, Levent Yurdaer; Adan Gökbulut, Aysun ; Baran, Yusuf ; Yemenicioğlu, Ahmet 
Nov-2017Biodiversity, drug discovery, and the future of global health: Introducing the biodiversity to biomedicine consortium, a call to actionNeergheen-Bhujun, Vidushi; Awan, Almas Taj; Baran, Yusuf ; Bunnefeld, Nils; Chan, Kit; Dela Cruz, Thomas Edison; Egamberdieva, Dilfuza; Elsasser, Simon; Johnson, Mari-Vaughn V.; Komai, Shoji; Konevega, Andrey L.; Malone, John H.; Mason, Paul; Nguon, Rothsophal; Piper, Ross; Shrestha, Uttam Babu; Pesic, Milica; Kagansky, Alexander
Mar-2023Biodiversity: the overlooked source of human healthLinhares, Yuliya; Kaganski, Alexander; Agyare, Christian; Aksan Kurnaz, Işıl; Neergheen, Vidushi; Kolodziejczyk, Bartlomiej; Baran, Yusuf 
2019Biofabrication of cellular structures using weightlessness as a biotechnological toolAnıl İnevi, Müge ; Sarıgil, Öykü ; Yaman, Sena ; Yalçın Özuysal, Özden ; Meşe, Gülistan ; Tekin, Hüseyin Cumhur ; Özçivici, Engin 
Dec-2018Biofabrication of in situ self assembled 3D cell cultures in a weightlessness environment generated using magnetic levitationAnıl İnevi, Müge ; Yaman, Sena ; Arslan Yıldız, Ahu ; Meşe, Gülistan ; Yalçın Özuysal, Özden ; Tekin, Hüseyin Cumhur ; Özçivici, Engin 
Sep-2013Biotechnology for enhanced nutritional quality in plantsUncu, Ayşe Özgür; Doğanlar, Sami ; Frary, Anne 
2017Bir mikroakışkan aygıt üretimi yöntemiPesen Okvur, Devrim 
2017Bir mikroakışkan cihaz kullanılarak ilaç etkilerinin belirlenmesi için bir yöntemPesen Okvur, Devrim 
Sep-2008Bisphosphonate treatment and radiotherapy in metastatic breast cancerUral, Ali Uğur; Avcu, Ferit; Baran, Yusuf 
2012Biyolojik-kimyasal reaksiyonların benzetimi için Monte Carlo teknikleriAltınkaya, Mustafa Aziz ; İnal, Fikret ; Baran, Yusuf 
2024Blank frame and intensity variation distortion detection and restoration pipeline for phase-contrast microscopy time-lapse imagesUçar, Mahmut; Iheme, Leonardo O.; Önal, Sevgi; Pesen Okvur, Devrim ; Yalçın Özuysal, Özden ; Töreyin, Behçet Uğur; Ünay, Devrim
2014Bor toksisitesinin moleküler mekanizmalarının araştırılmasıKoç, Ahmet ; Karakaya, Hüseyin Çağlar 
Nov-2011Boron stress activates the general amino acid control mechanism and inhibits protein synthesisUluışık, İrem; Kaya, Alaattin; Fomenko, Dmitri E.; Karakaya, Hüseyin Çağlar ; Carlson, Bradley A.; Gladyshev, Vadim N.; Koç, Ahmet 
2023Boron stress signal is transmitted through the TOR pathwayUluışık, İrem; Koç, Ahmet 
2010Borun biyolojik etki mekanizması; bor metabolizmasında rol oynayan genlerin bulunmasıKoç, Ahmet ; Karakaya, Hüseyin Çağlar 
2020Brain lipid profile of early onset Tay-Sachs disease mouse modelŞengül, Tuğçe; Can, Melike; Akyıldız Demir, Seçil; Klose, C.; Surma, M.; Seyrantepe, Volkan 
2021Breast cancer cells and macrophages in a paracrine-juxtacrine loopÖnal, Sevgi; Türker Burhan, Merve; Batı Ayaz, Gizem; Yanık, Hamdullah; Pesen Okvur, Devrim 
2024Breast Cancer Immunity: It is TIME for the Next ChapterQuail, Daniela F.; Park, Morag; Welm, Alana L.; Ekiz, H. Atakan 
2023c-Met activation promotes extravasation of hepatocellular carcinoma cells into 3D-cultured hepatocyte cells in lab-on-a-chip deviceBağcı, Gülsün; Çömez, Dehan; Topel, Hande; Yılmaz, Yeliz; Bağırsakçı, Ezgi; Güneş, Aysim; Batı Ayaz, Gizem; Tahmaz, İsmail; Bilgen, Müge; Solmaz, Gülhas; Pesen Okvur, Devrim 
2013Cadmium-induced physiological and genotoxic alterations in bryophyllum daigremontianumÖzyiğit, İbrahim İlker; Yılmaz, Seçil; Doğan, İlhan ; Sakcalı, Mehmet Serdal; Kekeç, Güzin; Demir, Göksel; Severoğlu, Zeki
2011Caffeic acid phenethyl ester triggers apoptosis through induction of loss of mitochondrial membrane potential in CCRF-CEM cellsAvcı, Çığır Biray; Gündüz, Cumhur; Baran, Yusuf ; Şahin, Fahri; Yılmaz, Sunde; Doğan, Zeynep Özlem; Saydam, Güray
2012A call for benchmark data in mass spectrometry-based proteomicsAllmer, Jens 
2013Can MiRBase provide positive data for machine learning for the detection of MiRNA hairpins?Demirci, Müşerref Duygu Saçar; Hamzeiy, Hamid; Allmer, Jens 
2021Cancer stem cells in tumor modeling: Challenges and future directionsDoğan, Elvan; Kısım, Aslı; Batı Ayaz, Gizem; Kubicek, Gregory J.; Pesen Okvur, Devrim ; Miri, Amir K.
2023Canonical Wnt and TGF-β/BMP signaling enhance melanocyte regeneration but suppress invasiveness, migration, and proliferation of melanoma cellsKatkat, Esra; Demirci, Yeliz; Heger, Guillaume; Karagülle, Doğa; Papatheodorou, Irene; Brazma, Alvis; Özhan, Güneş 
Apr-2019Cascade therapy with doxorubicin and survivin-targeted tailored nanoparticles: An effective alternative for sensitization of cancer cells to chemotherapyDağlıoğlu, Cenk ; Kacı, Fatma Necmiye
Dec-2017Categorization of species based on their microRNAs employing sequence motifs, information-theoretic sequence feature extraction, and k-mersYousef, Malik; Nigatu, Dawit; Levy, Dalit; Allmer, Jens ; Henkel, Werner
2012Cell adhesion on nanometer scale protein patterns with micrometer scale spacingsVurmaz, Deniz; Oyman, Gizem; Okvur, Devrim Pesen 
2015A cell division cycle 7-related protein kinase inhibitor suppresses glioblastoma cell growth in vitroErkan, E. P.; Dinç, Melike; Eren, E.; Allmer, Jens ; Yalçın, Talat ; Genç, S.
Nov-2016Cell proliferation and cytotoxicity assaysAdan, Aysun ; Kiraz, Yağmur ; Baran, Yusuf 
2019Cell segmentation of 2D phase-contrast microscopy images with deep learning methodAyanzadeh, Aydın; Yağar, Hüseyin Onur; Yalçın Özuysal, Özden ; Pesen Okvur, Devrim ; Töreyin, Behçet Uğur; Unay, Devrim; Önal, Sevgi
Oct-2017Cellular distribution of invadopodia is regulated by nanometer scale surface protein patternsBatı Ayaz, Gizem; Can, Ali; Pesen Okvur, Devrim 
2010Ceramides regulate resveratrol-induced apoptosis in human acute promyelocytic and chronic myeloid leukemia cellsBaran, Yusuf ; Kartal, Melis; Çakır, Zeynep; Saydam, Güray; Şahin, Fahri
2010Changes in expression profiles of apoptosis, invasion, metastasis, angiogenesis, transcription factors, cell cycle control and tumour supressor genes in nilotinib treated chronic myeloid leukemia cellsBaran, Yusuf ; Camgöz, Aylin; Can, Geylani
2013Changes in gene expression profiles in response to apigenin in imatinib sensitive and resistant chronic myeloid leukemia cellsBaran, Yusuf ; Gökbulut, Aysun ; Cincin, Zeynep; Çakmakoğlu, Bedia; Kozanoğlu, İlknur