Browsing by Department 03.01. Department of Bioengineering

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Issue DateTitleAuthor(s)
20233D printing-assisted fabrication of microfluidic pneumatic valvesKeleş, Şeyda; Karakuzu, Betül; Tekin, Hüseyin Cumhur 
2021Absorbance-based detection of arsenic in a microfluidic system with push-and-pull pumpingKarakuzu, Betül; Gülmez, Yekta; Tekin, H. Cumhur 
2019Active mixing strategy with electromechanical platform for Lab-on-A-chip applicationsKarakuzu, Betül; Özçivici, Engin ; Tekin, Hüseyin Cumhur ; Tarım, E. Alperay
2020Adhesive bonding strategies to fabricate high-strength and transparent 3D printed microfluidic deviceKeçili, Seren; Tekin, Hüseyin Cumhur 
2020Adjuvant potency of Astragaloside VII embedded cholesterol nanoparticles for H3N2 influenza vaccineGenç, Rukan; Yakuboğulları, Nilgün ; Nalbantsoy, Ayşe; Coven, Fethiye; Bedir, Erdal 
2017AKT inhibitor ARQ 092 and sorafenib additively inhibit progression of hepatocellular carcinoma and improve immune system in cirrhotic rat modelJilkova, Z. M.; Zeybek Kuyucu, Ayça ; Kurma, K.; Pour, S. T. A.; Roth, G. S.; Abbadessa, G.; Decaens, T.
2024Anthraquinones and macrocyclic lactones from endophytic fungus penicillium roseopurpureum and their bioactivitiesDizmen, Berivan ; Üner, Göklem ; Küçüksolak, Melis ; Gören, Ahmet C.; Ballar Kırmızıbayrak, Petek; Bedir, Erdal 
Jul-2017Antimicrobial activity and chemical composition screening of Anacyclus pyrethrum rootCanlı, Kerem; Yetgin, Ali ; Akata, Ilgaz; Altuner, Ergin Murat
Jul-2017Antimicrobial activity and chemical composition screening of Epilobium montanum rootCanlı, Kerem; Yetgin, Ali ; Akata, Ilgaz; Altuner, Ergin Murat
2020Applicability of low-intensity vibrations as a regulatory factor on stem and progenitor cell populationsBaskan, Öznur ; Karadaş, Özge; Meşe, Gülistan ; Özçivici, Engin 
2016Application of low intensity mechanical vibrations for bone tissue maintenance and regenerationÖlçüm, Melis; Baskan, Öznur ; Karadaş, Özge; Özçivici, Engin 
2019Application of magnetic levitation induced weightlessness to detect cell lineageSarıgil, Öykü ; Anıl İnevi, Müge ; Yılmaz, Esra; Çağan, Melike; Meşe, Gülistan ; Tekin, Hüseyin Cumhur ; Özçivici, Engin 
2023Ascorbic acid enhances the metabolic activity, growth and collagen production of human dermal fibroblasts growing in three-dimensional (3D) cultureDikici, Serkan 
2020Assessment of cell cycle and viability of magnetic levitation assembled cellular structuresAnıl İnevi, Müge ; Ünal, Yağmur Ceren ; Yaman, Sena ; Tekin, H. Cumhur ; Meşe, Gülistan ; Meşe, Gülistan 
Nov-2013Assessment of cholesterol-derived ionic copolymers as potential vectors for gene deliverySevimli, Sema; Sagnella, Sharon; Kavallaris, Maria; Bulmuş, Volga ; Davis, Thomas P.
2023Astragalus saponins, Astragaloside VII and newly synthesized derivatives, induce dendritic cell maturation and T cell activationYakuboğulları, Nilgün ; Çağır, Ali ; Bedir, Erdal ; Sağ, Duygu
2023Astragalus sp.Yakuboğulları, Nilgün ; Bedir, Erdal 
2019Astragalus trojanus Stev. Batch Cultures: Cycloartane-type Metabolite Accumulation in Response to pH, Sucrose and Casein HydrolysateNartop, Pınar; Gürel, Aynur; Akgün, İsmail Hakkı; Bedir, Erdal 
2021Bacterial cellulose based facial mask with antioxidant property and high moisturizing capacityBilgi, Eyüp ; Homan Gökçe, Evren; Bayır, Ece; Şendemir, Aylin; Özgen Özer, Kevser; Hames Tuna, Elif Esin
2018Bacterial detection using bacteriophages and gold nanorods by following time-dependent changes in Raman spectral signalsMoghtader, Farzaneh; Tomak, Aysel ; Zareie, Hadi M.; Pişkin, Erhan
2023Bacterial mirobiota and chemical properties of Turkish tarhanaErsoy Ömeroğlu, Esra; Can, Özge ; Temiz, Sevval Nur; Al, Rabia; Altunbas, Osman; Soyucok, Ali; Yurt, Mediha Nur Zafer
Sep-2010Batch and column studies on heavy metal removal using a local zeolitic tuffBalköse, Devrim ; Ülkü, Semra ; Can, Özge 
2007Bazı kültür ve yabani domates,biber ve patlacan türlerinde antioksidant özelliği olan karakter için mevcut genetik varyasyonun tayin edilmesi ve bu karakterleri kontrol eden genlerin moleküler haritalanmasıFrary, Anne ; Doğanlar, Sami ; Yemenicioğlu, Ahmet ; Rusçuklu, Dane; Ökmen, Bilal ; Şığva, Hasan Özgür; Tümbilen, Yeliz; Keçeli, Mehmet Ali; Yüce, Duygu; Göl, Deniz; Kırsoy, Öyküm
2021Benzodiazepine derivatives from marine-derived Streptomyces cacaoi 14cm034Çetinel Aksoy, Semiha; Küçüksolak, Melis ; Uzel, Ataç; Bedir, Erdal 
2019Bioassay guided isolation of naphthoquinones from Onosma aksoyii, investigation of their cytotoxic propertiesKul, Demet; Karakoyun, Çiğdem; Yılmaz, Sinem; Pirhan, Ademi Fahri; Bedir, Erdal 
May-2021Biocomposite scaffolds for 3D cell culture: Propolis enriched polyvinyl alcohol nanofibers favoring cell adhesionBilginer, Rumeysa; Özkendir İnanç, Dilce; Yıldız, Ümit Hakan ; Arslan Yıldız, Ahu 
Jan-2018A BioDesign approach to obtain high yields of biosimilars by anti-apoptotic cell engineering: A case study to increase the production yield of anti-TNF alpha producing recombinant CHO cellsGülce İz, Sultan; Anıl İnevi, Müge ; Sağlam Metiner, Pelin; Ayyıldız Tamiş, Duygu; Kisbet, Nazlı
Apr-2022Biofabrication by magnetic levitational assembly of cells into defined 3D cellular structuresArslan Yıldız, Ahu 
2019Biofabrication of cellular structures using weightlessness as a biotechnological toolAnıl İnevi, Müge ; Sarıgil, Öykü ; Yaman, Sena ; Yalçın Özuysal, Özden ; Meşe, Gülistan ; Tekin, Hüseyin Cumhur ; Özçivici, Engin 
Dec-2018Biofabrication of in situ self assembled 3D cell cultures in a weightlessness environment generated using magnetic levitationAnıl İnevi, Müge ; Yaman, Sena ; Arslan Yıldız, Ahu ; Meşe, Gülistan ; Yalçın Özuysal, Özden ; Tekin, Hüseyin Cumhur ; Özçivici, Engin 
2023Biofabrication of scaffold-free 3d cellular structures using magnetic levitational assembly to study cardiac toxicityOnbaş, Rabia; Yıldız, Ahu Arslan 
Jul-2023Bioinspired multi-layer biopolymer-based dental implant coating for enhanced osseointegrationÜzülmez, Betül; Demirsoy, Zeynep; Can, Özge ; Gülseren, Gulcihan
2020Biomedical nanomaterials: applications, toxicological concerns, and regulatory needsÖksel Karakuş, Ceyda ; Bilgi, Eyüp ; Winkler, David
2023Biomimetic dentin repair: Amelogenin-derived peptide guides occlusion and peritubular mineralization of human teethYücesoy, Deniz T. ; Fong, Hanson; Hamann, John; Hall, Eric; Doğan, Sami; Sarıkaya, Mehmet
2019Biomimetic hybrid scaffold consisting of co-electrospun collagen and PLLCL for 3D cell cultureTürker, Esra ; Yıldız, Ümit Hakan ; Arslan Yıldız, Ahu 
2023Biopatterning of 3D cellular model by contactless magnetic manipulation for cardiotoxicity screeningÖnbaş, Rabia; Arslan Yıldız, Ahu 
2023Biopatterning of 3d cellular structures via contactless magnetic manipulation for drug screeningÖnbaş, Rabia; Arslan Yıldız, Ahu 
2022Bioprinting of hydrogels for tissue engineering and drug screening applicationsÖzmen, Ece; Yıldırım, Özüm; Arslan Yıldız, Ahu 
Jul-2018Biotransformation of cyclocanthogenol by the endophytic fungus Alternaria eureka 1E1BL1Ekiz, Güner; Duman, Seda ; Bedir, Erdal 
Jun-2018Biotransformation of neoruscogenin by the endophytic fungus Alternaria eurekaÖzçınar, Özge; Tağ, Özgür; Yusufoğlu, Hasan; Kıvçak, Bijen; Bedir, Erdal 
Aug-2018Biotransformation of ruscogenins by Cunninghamella blakesleeana NRRL 1369 and neoruscogenin by endophytic fungus Neosartorya hiratsukaeÖzçınar, Özge; Tağ, Özgür; Yusufoğlu, Hasan; Kıvçak, Bijen; Bedir, Erdal 
2014Birden fazla biyomolekülün algılanması için akıllı nanoyapı dizileriZareie, Hadi M.; Bulmuş, Volga 
2015Biyosentetik hibrit polimerlerin RAFT polimerizasyonu ile üretilmesi ve hücre membranıyla etkileşimlerinin vücut dışında değerlendirilmesiBulmuş Zareie, Esma Volga 
Oct-2017BODIPY-conjugated chitosan nanoparticles as a fluorescent probeBor, Gizem; Üçüncü, Muhammed; Emrullahoğlu, Mustafa ; Tomak, Aysel ; Şanlı Mohamed, Gülşah 
2015Bone marrow stem cells adapt to low-magnitude vibrations by altering their cytoskeleton during quiescence and osteogenesisDemiray, Levent; Özçivici, Engin 
2020Boosting up printability of biomacromolecule based bio-ink by modulation of hydrogen bonding pairsKöksal, Büşra; Önbaş, Rabia; Başkurt, Mehmet; Şahin, Hasan ; Arslan Yıldız, Ahu ; Yıldız, Ümit Hakan 
2019Cell separation with hybrid magnetic levitation-based lensless holographic microscopy platformDelikoyun, Kerem ; Yaman, Sena ; Anıl İnevi, Müge ; Özçivici, Engin ; Tekin, Hüseyin Cumhur 
Oct-2012Cleavage of ring A and formation of an unusual nor-triterpene skeleton via the Baeyer-Villiger reactionTağ, Özgür; Çağır, Ali ; Khan, Ikhlas A.; Bedir, Erdal 
2022Cloning, expression, and characterization of a novel sericin-like proteinBostan, Fatmanur; Sürmeli, Nur Başak 
2019CNT incorporated polyacrilonitrile/polypyrrole nanofibers as keratinocytes scaffoldİnce Yardımcı, Atike; Aypek, Hande; Öztürk, Özgür; Yılmaz, Selahattin ; Özçivici, Engin ; Meşe, Gülistan ; Selamet, Yusuf 
2018Combination of AKT inhibitor ARQ 092 and sorafenib potentiates inhibition of tumor progression in cirrhotic rat model of hepatocellular carcinomaMacek Jilkova, Zuzana; Zeybek Kuyucu, Ayça ; Kurma, Keerthi; Tayébéh, Séyédéh; Pour, Ahmad; Roth, Gaël S.; Abbadessa, Giovanni; Yu, Yi; Schwartz, Brian; Sturm, Nathalie; Marche, Patrice N.; Hainaut, Pierre; Decaens, Thomas
Sep-2022Comparative study of the cytotoxicity of hydroxyapatite, tricalcium phosphate and calcium phosphate nanomaterials on Panc-1 and HEK293 Cell LineÇeşmeli, Selin ; Öksel Karakuş, Ceyda 
2018Comparison of antimicrobial activity of allium sativum cloves from china and Taskopru, TurkeyYetgin, Ali ; Canlı, Kerem; Altuner, Ergin Murat
Sep-2022Computational nanotoxicology: a case study with silver and zinc nanomaterialsBilgi, Eyüp ; Öksel Karakuş, Ceyda 
Apr-2011Conjugation of siRNA with comb-type PEG enhances serum stability and gene silencing efficiencyGunasekaran, Karthikeyan; Nguyen, Thi H.; Maynard, Heather D.; Davis, Thomas P.; Bulmuş, Volga 
Jul-2022Connexin 32 overexpression increases proliferation, reduces gap junctional intercellular communication, motility and epithelial-to-mesenchymal transition in Hs578T breast cancer cellsUğur, Deniz ; Güngül, Taha Buğra ; Yücel, Simge ; Özçivici, Engin ; Yalçın Özuysal, Özden ; Meşe Özçivici, Gülistan 
11-Oct-2016Controlled growth mechanism of poly (3-hexylthiophene) nanowiresKıymaz, D.; Yağmurcukardeş, Mehmet ; Tomak, Aysel ; Şahin, Hasan ; Senger, Ramazan Tugrul ; Peeters, François M.; Zareie, Hadi M.; Zafer, Ceylan
2018Correction: Scaffold-free three-dimensional cell culturing using magnetic levitationTürker, Esra ; Demircak, Nida; Arslan Yıldız, Ahu 
2021Cost-effective and rapid prototyping of PMMA microfluidic device via polymer-assisted bondingSözmen, Alper Baran ; Arslan Yıldız, Ahu 
Sep-2017Cycloartane-type glycosides from Astragalus brachycalyx FISCHER and their effects on cytokine release and hemolysisAslanipour, Behnaz; Gülcemal, Derya; Nalbantsoy, Ayşe; Yusufoğlu, Hasan; Bedir, Erdal 
Jul-2018Cycloartane-type sapogenol derivatives inhibit NF?B activation as chemopreventive strategy for inflammation-induced prostate carcinogenesisDebeleç Bütüner, Bilge; Öztürk, Mert Burak; Tağ, Özgür; Akgün, İsmail Hakkı; Yetik Anacak, Günay; Bedir, Erdal ; Korkmaz, Kemal Sami
2019Cytotoxic tolerance of healthy and cancerous bone cells to anti-microbial phenolic compounds depend on culture conditionsKaradaş, Özge; Meşe, Gülistan ; Özçivici, Engin 
2014Daily application of low magnitude mechanical stimulus inhibits the growth of MDA-MB-231 breast cancer cells in vitroÖlçüm, Melis; Özçivici, Engin 
2021Decellularised extracellular matrix decorated PCL PolyHIPE scaffolds for enhanced cellular activity, integration and angiogenesisDikici, Serkan ; Aldemir Dikici, Betül ; MacNeil, Sheila; Claeyssens, Frederik
2019Deep convolutional neural networks for viability analysis directly from cell holograms captured using lensless holographic microscopyDelikoyun, Kerem ; Çine, Ersin; Anıl İnevi, Müge ; Özçivici, Engin ; Özuysal, Mustafa ; Tekin, Hüseyin Cumhur 
2019Density-based separation of microparticles using magnetic levitation technology integrated on lensless holographic microscopy platformDelikoyun, Kerem ; Yaman, Sena ; Tekin, Hüseyin Cumhur 
2017Determination of the chemical composition and antimicrobial activity of Frankenia hirsutaCanlı, Kerem; Şimşek, Özcan; Yetgin, Ali ; Altuner, Ergin Murat
Nov-2021Developing wound dressings using 2-deoxy-d-ribose to induce angiogenesis as a backdoor route for stimulating the production of vascular endothelial growth factorDikici, Serkan ; Yar, Muhammad; Bullock, Anthony J.; Shepherd, Joanna; Roman, Sabiniano; MacNeil, Sheila
2020Development and verification of a three-dimensional (3D) breast cancer tumor model composed of circulating tumor cell (CTC) subsetsAnıl İnevi, Müge ; Sağlam Metiner, Pelin; Kabak, Evrim Ceren; Gülce İz, Sultan
2022Development of 3D cardiac models via magnetic manipulation for drug screening studiesÖnbaş, Rabia; Arslan Yıldız, Ahu 
Nov-2022Development of a hydrocolloid bio-ink for 3D bioprintingYıldırım, Özüm; Arslan Yıldız, Ahu 
2019Development of adjuvant nanocarrier systems for seasonal influenza A (H3N2) vaccine based on Astragaloside VII and gum tragacanth (APS)Yakuboğulları, Nilgün ; Genç, Rukan; Coven, Fethiye; Nalbantsoy, Ayşe; Bedir, Erdal 
2020Development of an improved Amplex Red peroxidation activity assay for screening cytochrome P450 variants and identification of a novel mutant of the thermophilic CYP119Başlar, M. Semih; Sakallı, Tuğçe; Güralp, Gülce ; Kestevur Doğru, Ekin; Haklı, Emre; Sürmeli, Nur Başak 
2024Development of chrono-spectral gold nanoparticle growth based plasmonic biosensor platformSözmen, Alper Baran ; Elveren, Beste; Erdoğan, Duygu; Mezgil, Bahadır; Baştanlar, Yalın ; Yıldız, Ümit Hakan ; Arslan Yıldız, Ahu 
Jul-2020Development of magnetic levitation-based sensitive assaysYaman, Sena 
Apr-2022Development of new generation hydrocolloid bio-ink for 3D bioprintingArslan Yıldız, Ahu 
Sep-2022Development of novel nanotoxicity assessment method utilizing 3D printing systemBaşlar, Muhammet Semih; Öksel Karakuş, Ceyda ; Aldemir Dikici, Betül 
Dec-2019Development of plasmonic nanostructures for photothermal therapy of prostate and breast cancerTomak, Aysel 
2023Development of pro-angiogenic wound dressings from 2-deoxy-D-ribose (2dDR)-loaded decellularized plant leavesDikici, Serkan ; Çavdaroğlu, Çağrı 
2023Development of tissue-engineered vascular grafts from decellularized parsley stemsÇevik, Merve; Dikici, Serkan 
2023Diagnosis of ruminant viral diseases with loop-mediated isothermal amplificationAyaz Kök, Sanem; Üstün, Selcen; Taşkent, Hümeyra 
2021A diaminoethane motif bearing low molecular weight polymer as a new nucleic acid delivery agentZelcak, Aykut; Ünal, Yağmur Ceren ; Meşe, Gülistan ; Bulmuş, Volga 
12-Dec-2011Dicer-labile PEG conjugates for siRNA deliveryKow, Siew Ching; Mccorroll, Joshua A.; Valade, David; Boyer, Cyrille; Dwarte, Tanya; Davis, Thomas P.; Kavallaris, Maria; Bulmuş, Volga 
2011Doxorubicin conjugated, crosslinked, PEGylated particles prepared via one-pot thiol-ene modification of a homopolymer scaffold: synthesis and in vitro evaluationWong, Lingjiun; Kavallaris, Maria; Bulmuş, Volga 
2017Düşük sükroz derişimlerinin görünür bölge spektroskopisi ve yapay sinir ağları ile kestirimiMezgil, Bahadır; Erdoğan, Duygu; Alduran, Yeşim; Yıldız, Ümit Hakan ; Arslan Yıldız, Ahu ; Baştanlar, Yalın 
Sep-2017Effect of molecular architecture on cell interactions and stealth properties of PEGÖzer, İmran; Tomak, Aysel ; Zareie, Hadi M.; Baran, Yusuf ; Bulmuş, Volga 
14-Jun-2016Effect of PEG grafting density and hydrodynamic volume on gold nanoparticle-cell interactions: an investigation on cell cycle, apoptosis, and DNA damageUz, Metin; Bulmuş, Volga ; Alsoy Altınkaya, Sacide 
2019Effects of N-terminal and C-terminal polyhistidine tag on the stability and function of the thermophilic P450 CYP119Aslantaş, Yaprak; Sürmeli, Nur Başak 
2022The effects of novel telomerase activators on human adipose-derived mesenchymal stem cell (hAD-MSC) proliferation and osteogenic differentiationKuru, G.; Küçüksolak, Melis ; Pulat, G.; Karaman, O.; Bedir, Erdal 
2013Effects of spaceflight on cells of bone marrow originÖzçivici, Engin 
2011Effects of surface functional groups on the aggregation stability of magnetite nanoparticles in biological media containing serumWiogo, Hilda T. R.; Lim, May; Bulmuş, Volga ; Amal, Rose
Jun-2018Efficient synthesis of cRGD functionalized polymers as building blocks of targeted drug delivery systemsThankappan, Hajeeth; Zelçak, Aykut; Taykoz, Damla; Bulmuş, Volga 
Jul-2022An electromechanical lab-on-a-chip platform for colorimetric detection of serum creatinineKarakuzu, Betül; Tarım, Ergün Alperay; Öksüz, Cemre; Tekin, Hüseyin Cumhur 
2020Electromechanical lab-on-a-chip platform for creatinine analysis using automated elisa protocolsKarakuzu, Betül; Tarım, Ergün Alperay; Öksüz, Cemre; Tekin, Hüseyin Cumhur 
Mar-2023Electromechanical RT-LAMP device for portable SARS-CoV-2 detectionTarım, Ergün Alperay; Öksüz, Cemre; Karakuzu, Betül; Appak, Özgür; Sayıner, Ayça Arzu; Tekin, Hüseyin Cumhur 
2021Electrospun GelMA fibers and p(HEMA) matrix composite for corneal tissue engineeringArıca, Tuğçe A.; Güzelgülgen, Meltem ; Yıldız, Ahu Arslan ; Demir, Mustafa Muammer 
Feb-2015The endocytic pathway and therapeutic efficiency of doxorubicin conjugated cholesterol-derived polymersSevimli, Sema; Sagnella, Sharon; Macmillan, Alexander; Whan, Renee; Kavallaris, Maria; Bulmuş, Volga ; Davis, Thomas P.
2024Engineering periodontal tissue interfaces using multiphasic scaffolds and membranes for guided bone and tissue regenerationÖzkendir, Özge; Karaca, İlayda; Çullu, Selin; Erdoğan, Oğul Can ; Yaşar, Hüsniye Nur,; Dikici, Serkan ; Owen, Robert; Aldemir Dikici, Betül 
2015Erişkin kök hücrelerinde doku yönelimi ve dış mekanik etkilere bağlı gelişen altyapısal değişikliklerin karakterizasyonuÖzçivici, Engin ; Yalçın Özuysal, Özden ; Meşe Özçivici, Gülistan 
Jun-2022Evaluating the performance of conventional DAF and PosiDAF processes for cyanobacteria separation at a pilot plant scaleYap, Russell K.L.; Rao, N. R.H.; Holmes, M.; Whittaker, Michael; Stuetz, Richard M.; Jefferson, Bruce; Bulmuş, Volga ; Peirson, William Leslie; Henderson, R. K.